{ "_id": "6aae3a7b3d719c1f84079b8a", "Package": "BeastJar", "Type": "Package", "Title": "JAR Dependency for MCMC Using 'BEAST'", "Version": "10.5.1", "Authors@R": "c(\nperson(\"Marc A.\", \"Suchard\", email = \"msuchard@ucla.edu\", role = c(\"aut\",\"cre\",\"cph\")),\nperson(\"Andrew\", \"Rambaut\", role = \"cph\"),\nperson(\"Alexei J.\", \"Drummond\", role = \"cph\")\n)", "Description": "Provides JAR to perform Markov chain Monte Carlo (MCMC)\ninference using the popular Bayesian Evolutionary Analysis by\nSampling Trees 'BEAST X' software library of Baele et al (2025)\n. 'BEAST X' supports\nauto-tuning Metropolis-Hastings, slice, Hamiltonian Monte Carlo\nand Sequential Monte Carlo sampling for a large variety of\ncomposable standard and phylogenetic statistical models using\nhigh performance computing. By placing the 'BEAST X' JAR in\nthis package, we offer an efficient distribution system for\n'BEAST X' use by other R packages using CRAN.", "License": "Apache License 2.0", "Encoding": "UTF-8", "URL": "https://github.com/beast-dev/BeastJar", "Copyright": "See file COPYRIGHTS", "RoxygenNote": "7.3.2", "SystemRequirements": "Java (>= 1.8)", "Language": "en-US", "Config/pak/sysreqs": "make default-jdk", "Repository": "https://beast-dev.r-universe.dev", "Date/Publication": "2025-07-20 16:12:34 UTC", "RemoteUrl": "https://github.com/beast-dev/beastjar", "RemoteRef": "HEAD", "RemoteSha": "0cbaee7d669ad0fab7b8f36eba5b62772c1cc390", "NeedsCompilation": "no", "Packaged": { "Date": "2026-09-19 07:22:29 UTC", "User": "root" }, "Author": "Marc A. Suchard [aut, cre, cph],\nAndrew Rambaut [cph],\nAlexei J. Drummond [cph]", "Maintainer": "Marc A. Suchard ", "_user": "beast-dev", "_type": "src", "_file": "BeastJar_10.5.1.tar.gz", "_fileid": "https://r2.ropensci.org/c2b6d9b5e11ce5e884b8c1fad2083cd09720927022f1eee9bca306d6d450ea7c", "_filesize": 8163163, "_sha256": "c2b6d9b5e11ce5e884b8c1fad2083cd09720927022f1eee9bca306d6d450ea7c", "_expires": "2026-12-28T07:32:09.000Z", "_created": "2026-09-19T07:22:29.000Z", "_published": "2026-09-19T07:32:11.482Z", "_jobs": [ { "job": 105860489604, "time": 130, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "10580026922" }, { "job": 105860489759, "time": 129, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "10579539930" }, { "job": 105860489624, "time": 175, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "10580262025" }, { "job": 105860489580, "time": 151, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "10579794861" }, { "job": 105859972542, "time": 226, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "10579749536" }, { "job": 105860489618, "time": 131, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "10579799547" }, { "job": 105860489738, "time": 70, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "10580385272" }, { "job": 105860489658, "time": 66, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "10579469906" }, { "job": 105860489734, "time": 65, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "10580485102" } ], "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/beast-dev/actions/runs/35428972317", "_status": "success", "_upstream": "https://github.com/beast-dev/beastjar", "_commit": { "id": "0cbaee7d669ad0fab7b8f36eba5b62772c1cc390", "author": "Marc A. Suchard ", "committer": "Marc A. Suchard ", "message": "update man page for single-core\n", "time": 1753027954 }, "_maintainer": { "name": "Marc A. Suchard", "email": "msuchard@ucla.edu", "login": "msuchard", "description": "", "uuid": 149039 }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5.0", "role": "Depends" }, { "package": "rJava", "role": "Imports" }, { "package": "testthat", "role": "Suggests" } ], "_owner": "beast-dev", "_selfowned": true, "_usedby": 1, "_updates": [], "_tags": [], "_stars": 1, "_contributors": [ { "user": "msuchard", "count": 79, "uuid": 149039 } ], "_userbio": { "uuid": 12112426, "type": "organization", "name": "Bayesian Evolutionary Analysis Sampling Trees", "followers": 41 }, "_downloads": { "count": 626, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/BeastJar" }, "_devurl": "https://github.com/beast-dev/beastjar", "_searchresults": 2, "_topics": [ "openjdk" ], "_rbuild": "4.6.1", "_assets": [ "extra/BeastJar.html", "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md" ], "_homeurl": "https://github.com/beast-dev/beastjar", "_realowner": "beast-dev", "_cranurl": true, "_releases": [ { "version": "1.10.5", "date": "2020-10-13" }, { "version": "1.10.6", "date": "2020-10-26" }, { "version": "10.5.0", "date": "2025-07-20" }, { "version": "10.5.1", "date": "2025-08-21" } ], "_exports": [ "supportsJava8" ], "_help": [ { "page": "BeastJar", "title": "BeastJar", "topics": [ "BeastJar" ] }, { "page": "supportsJava8", "title": "Determine if Java virtual machine supports Java", "topics": [ "supportsJava8" ] } ], "_readme": "https://github.com/beast-dev/beastjar/raw/HEAD/README.md", "_rundeps": [ "rJava" ], "_sysdeps": [ { "shlib": "libjvm", "package": "openjdk-25-jre-headless", "headers": "openjdk-25-jre-headless", "source": "openjdk", "version": "25.0.4+7-1~26.04", "name": "openjdk", "homepage": "https://openjdk.java.net/", "description": "OpenJDK Java runtime, using Hotspot JIT (headless)" } ], "_score": 3.1760912590556813, "_indexed": true, "_nocasepkg": "beastjar", "_universes": [ "beast-dev", "msuchard" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "10.5.1", "date": "2026-09-19T07:24:43.000Z", "distro": "resolute", "commit": "0cbaee7d669ad0fab7b8f36eba5b62772c1cc390", "fileid": "https://r2.ropensci.org/a0185c8c0cb09f95f4625a65d2c09db7d5af468a634d0c2aadd8f5c8c241cacb", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/beast-dev/actions/runs/35428972317" }, { "r": "4.6.1", "os": "linux", "version": "10.5.1", "date": "2026-09-19T07:24:43.000Z", "distro": "resolute", "commit": "0cbaee7d669ad0fab7b8f36eba5b62772c1cc390", "fileid": "https://r2.ropensci.org/227a0395aff0cca8ea3f6d9c7af44db1ed3693b75596d485f8e33a6b4b6c5354", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/beast-dev/actions/runs/35428972317" }, { "r": "4.5.3", "os": "mac", "version": "10.5.1", "date": "2026-09-19T07:31:01.000Z", "commit": "0cbaee7d669ad0fab7b8f36eba5b62772c1cc390", "fileid": "https://r2.ropensci.org/e7cf4bd86afbb154768c5667225e69d197631ad8370bc8291933825ecbdfe042", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/beast-dev/actions/runs/35428972317" }, { "r": "4.6.1", "os": "mac", "version": "10.5.1", "date": "2026-09-19T07:30:43.000Z", "commit": "0cbaee7d669ad0fab7b8f36eba5b62772c1cc390", "fileid": "https://r2.ropensci.org/eee7e0a7887c1731d0015685c68c60faa3fff10e7026e66dc4b9a4cff47d4413", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/beast-dev/actions/runs/35428972317" }, { "r": "4.6.0", "os": "wasm", "version": "10.5.1", "date": "2026-09-19T07:24:59.000Z", "commit": "0cbaee7d669ad0fab7b8f36eba5b62772c1cc390", "fileid": "https://r2.ropensci.org/b4157179cadbf501a28c0c8b4f4bde4e449ab7a05acf86e34d08d37c81266912", "status": "success", "buildurl": "https://github.com/r-universe/beast-dev/actions/runs/35428972317" }, { "r": "4.7.0", "os": "win", "version": "10.5.1", "date": "2026-09-19T07:23:34.000Z", "commit": "0cbaee7d669ad0fab7b8f36eba5b62772c1cc390", "fileid": "https://r2.ropensci.org/0b48f95d6a510060a18efca8a088207b8e2db2a02e5db933c0ccb28372f7c8bc", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/beast-dev/actions/runs/35428972317" }, { "r": "4.5.3", "os": "win", "version": "10.5.1", "date": "2026-09-19T07:23:34.000Z", "commit": "0cbaee7d669ad0fab7b8f36eba5b62772c1cc390", "fileid": "https://r2.ropensci.org/344ace6680db3322b341c46214985e81b0826bfefda7d9797c47c5608043a406", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/beast-dev/actions/runs/35428972317" }, { "r": "4.6.1", "os": "win", "version": "10.5.1", "date": "2026-09-19T07:23:32.000Z", "commit": "0cbaee7d669ad0fab7b8f36eba5b62772c1cc390", "fileid": "https://r2.ropensci.org/ce21f1a9060148322d0f88c4cf5c8f66fac7baf64bece8f5b306d8eeab65651c", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/beast-dev/actions/runs/35428972317" } ] }