{ "_id": "6a37a51e3efcd9bda4421921", "Package": "BeastJar", "Type": "Package", "Title": "JAR Dependency for MCMC Using 'BEAST'", "Version": "10.5.1", "Authors@R": "c(\nperson(\"Marc A.\", \"Suchard\", email = \"msuchard@ucla.edu\", role = c(\"aut\",\"cre\",\"cph\")),\nperson(\"Andrew\", \"Rambaut\", role = \"cph\"),\nperson(\"Alexei J.\", \"Drummond\", role = \"cph\")\n)", "Description": "Provides JAR to perform Markov chain Monte Carlo (MCMC)\ninference using the popular Bayesian Evolutionary Analysis by\nSampling Trees 'BEAST X' software library of Baele et al (2025)\n. 'BEAST X' supports\nauto-tuning Metropolis-Hastings, slice, Hamiltonian Monte Carlo\nand Sequential Monte Carlo sampling for a large variety of\ncomposable standard and phylogenetic statistical models using\nhigh performance computing. By placing the 'BEAST X' JAR in\nthis package, we offer an efficient distribution system for\n'BEAST X' use by other R packages using CRAN.", "License": "Apache License 2.0", "Encoding": "UTF-8", "URL": "https://github.com/beast-dev/BeastJar", "Copyright": "See file COPYRIGHTS", "RoxygenNote": "7.3.2", "SystemRequirements": "Java (>= 1.8)", "Language": "en-US", "Config/pak/sysreqs": "make default-jdk", "Repository": "https://beast-dev.r-universe.dev", "Date/Publication": "2025-07-20 16:12:34 UTC", "RemoteUrl": "https://github.com/beast-dev/beastjar", "RemoteRef": "HEAD", "RemoteSha": "0cbaee7d669ad0fab7b8f36eba5b62772c1cc390", "NeedsCompilation": "no", "Packaged": { "Date": "2026-06-21 08:43:09 UTC", "User": "root" }, "Author": "Marc A. Suchard [aut, cre, cph],\nAndrew Rambaut [cph],\nAlexei J. Drummond [cph]", "Maintainer": "Marc A. Suchard ", "MD5sum": "64fb224449bac4ab8e191898c2ab72fc", "_user": "beast-dev", "_type": "src", "_file": "BeastJar_10.5.1.tar.gz", "_fileid": "a5ce9721a4da5244cdd3d23e0525a4637fbc1b334f8db6193eb7bb5c5114820a", "_filesize": 8163526, "_sha256": "a5ce9721a4da5244cdd3d23e0525a4637fbc1b334f8db6193eb7bb5c5114820a", "_created": "2026-06-21T08:43:09.000Z", "_published": "2026-06-21T08:47:25.977Z", "_distro": "noble", "_jobs": [ { "job": 82555799134, "time": 129, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7773586758" }, { "job": 82555799126, "time": 125, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7773586333" }, { "job": 82555799128, "time": 157, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7773586463" }, { "job": 82555799121, "time": 216, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7773591449" }, { "job": 82555588415, "time": 181, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7773570012" }, { "job": 82555799103, "time": 112, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7773584407" }, { "job": 82555799144, "time": 80, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7773580554" }, { "job": 82555799146, "time": 74, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7773579735" }, { "job": 82555799150, "time": 70, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7773579375" } ], "_buildurl": "https://github.com/r-universe/beast-dev/actions/runs/27898939083", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/beast-dev/beastjar", "_commit": { "id": "0cbaee7d669ad0fab7b8f36eba5b62772c1cc390", "author": "Marc A. Suchard ", "committer": "Marc A. Suchard ", "message": "update man page for single-core\n", "time": 1753027954 }, "_maintainer": { "name": "Marc A. Suchard", "email": "msuchard@ucla.edu", "login": "msuchard", "description": "", "uuid": 149039 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5.0", "role": "Depends" }, { "package": "rJava", "role": "Imports" }, { "package": "testthat", "role": "Suggests" } ], "_owner": "beast-dev", "_selfowned": true, "_usedby": 1, "_updates": [ { "week": "2025-29", "n": 17 } ], "_tags": [], "_stars": 1, "_contributors": [ { "user": "msuchard", "count": 79, "uuid": 149039 } ], "_userbio": { "uuid": 12112426, "type": "organization", "name": "Bayesian Evolutionary Analysis Sampling Trees", "followers": 40 }, "_downloads": { "count": 461, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/BeastJar" }, "_devurl": "https://github.com/beast-dev/beastjar", "_searchresults": 2, "_topics": [ "openjdk" ], "_rbuild": "4.6.0", "_assets": [ "extra/BeastJar.html", "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/beast-dev/beastjar", "_realowner": "beast-dev", "_cranurl": true, "_releases": [ { "version": "1.10.5", "date": "2020-10-13" }, { "version": "1.10.6", "date": "2020-10-26" }, { "version": "10.5.0", "date": "2025-07-20" }, { "version": "10.5.1", "date": "2025-08-21" } ], "_exports": [ "supportsJava8" ], "_help": [ { "page": "BeastJar", "title": "BeastJar", "topics": [ "BeastJar" ] }, { "page": "supportsJava8", "title": "Determine if Java virtual machine supports Java", "topics": [ "supportsJava8" ] } ], "_readme": "https://github.com/beast-dev/beastjar/raw/HEAD/README.md", "_rundeps": [ "rJava" ], "_sysdeps": [ { "shlib": "libjvm", "package": "openjdk-21-jre-headless", "headers": "openjdk-21-jre-headless", "source": "openjdk", "version": "21.0.11+10-1~24.04.2", "name": "openjdk", "homepage": "https://openjdk.java.net/", "description": "OpenJDK Java runtime, using Hotspot JIT (headless)" } ], "_score": 3.1760912590556813, "_indexed": true, "_nocasepkg": "beastjar", "_universes": [ "beast-dev", "msuchard" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "10.5.1", "date": "2026-06-21T08:45:17.000Z", "distro": "noble", "commit": "0cbaee7d669ad0fab7b8f36eba5b62772c1cc390", "fileid": "d49c1c9b75bc7bba8fd71ce593173361da8895b7aeab5aade0acb6d909714442", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/beast-dev/actions/runs/27898939083" }, { "r": "4.6.0", "os": "linux", "version": "10.5.1", "date": "2026-06-21T08:45:13.000Z", "distro": "noble", "commit": "0cbaee7d669ad0fab7b8f36eba5b62772c1cc390", "fileid": "69489da926331d80553fde6747757c4e5ebedb6807f69684170055425176b300", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/beast-dev/actions/runs/27898939083" }, { "r": "4.5.3", "os": "mac", "version": "10.5.1", "date": "2026-06-21T08:45:21.000Z", "commit": "0cbaee7d669ad0fab7b8f36eba5b62772c1cc390", "fileid": "6302282489c2e1c9e39c43e8ea577d1308c6a2defd774e20d4569a9f4c102f3f", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/beast-dev/actions/runs/27898939083" }, { "r": "4.6.0", "os": "mac", "version": "10.5.1", "date": "2026-06-21T08:45:48.000Z", "commit": "0cbaee7d669ad0fab7b8f36eba5b62772c1cc390", "fileid": "1fe7733f5893e459fdb837f28ab1b2e35475e911d094a9238fcb73ae656e9e6f", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/beast-dev/actions/runs/27898939083" }, { "r": "4.6.0", "os": "wasm", "version": "10.5.1", "date": "2026-06-21T08:45:15.000Z", "commit": "0cbaee7d669ad0fab7b8f36eba5b62772c1cc390", "fileid": "71cf607350a05b77c72141437191145cde183093cda6468bff0cab6948bde0f0", "status": "success", "buildurl": "https://github.com/r-universe/beast-dev/actions/runs/27898939083" }, { "r": "4.7.0", "os": "win", "version": "10.5.1", "date": "2026-06-21T08:44:22.000Z", "commit": "0cbaee7d669ad0fab7b8f36eba5b62772c1cc390", "fileid": "d496edbaf608dfd23c60a3274a4847e08cd2eb14a1eec94d15a648e800840bfe", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/beast-dev/actions/runs/27898939083" }, { "r": "4.5.3", "os": "win", "version": "10.5.1", "date": "2026-06-21T08:44:15.000Z", "commit": "0cbaee7d669ad0fab7b8f36eba5b62772c1cc390", "fileid": "bc0815b368aba346d1888da39dd4f7a654510e9805013305ec77186b65456312", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/beast-dev/actions/runs/27898939083" }, { "r": "4.6.0", "os": "win", "version": "10.5.1", "date": "2026-06-21T08:44:10.000Z", "commit": "0cbaee7d669ad0fab7b8f36eba5b62772c1cc390", "fileid": "56673d0821b6eb7261fc8c8a09674ca6863af00ac6bf3e5902a03577caf60926", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/beast-dev/actions/runs/27898939083" } ] }