{
  "_id": "6a1018b3acfb0bcc41c8596d",
  "Package": "BeastJar",
  "Type": "Package",
  "Title": "JAR Dependency for MCMC Using 'BEAST'",
  "Version": "10.5.1",
  "Authors@R": "c(\nperson(\"Marc A.\", \"Suchard\", email = \"msuchard@ucla.edu\", role = c(\"aut\",\"cre\",\"cph\")),\nperson(\"Andrew\", \"Rambaut\", role = \"cph\"),\nperson(\"Alexei J.\", \"Drummond\", role = \"cph\")\n)",
  "Description": "Provides JAR to perform Markov chain Monte Carlo (MCMC)\ninference using the popular Bayesian Evolutionary Analysis by\nSampling Trees 'BEAST X' software library of Baele et al (2025)\n<doi:10.1038/s41592-025-02751-x>. 'BEAST X' supports\nauto-tuning Metropolis-Hastings, slice, Hamiltonian Monte Carlo\nand Sequential Monte Carlo sampling for a large variety of\ncomposable standard and phylogenetic statistical models using\nhigh performance computing.  By placing the 'BEAST X' JAR in\nthis package, we offer an efficient distribution system for\n'BEAST X' use by other R packages using CRAN.",
  "License": "Apache License 2.0",
  "Encoding": "UTF-8",
  "URL": "https://github.com/beast-dev/BeastJar",
  "Copyright": "See file COPYRIGHTS",
  "RoxygenNote": "7.3.2",
  "SystemRequirements": "Java (>= 1.8)",
  "Language": "en-US",
  "Config/pak/sysreqs": "make default-jdk",
  "Repository": "https://beast-dev.r-universe.dev",
  "Date/Publication": "2025-07-20 16:12:34 UTC",
  "RemoteUrl": "https://github.com/beast-dev/beastjar",
  "RemoteRef": "HEAD",
  "RemoteSha": "0cbaee7d669ad0fab7b8f36eba5b62772c1cc390",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-22 08:46:49 UTC",
    "User": "root"
  },
  "Author": "Marc A. Suchard [aut, cre, cph],\nAndrew Rambaut [cph],\nAlexei J. Drummond [cph]",
  "Maintainer": "Marc A. Suchard <msuchard@ucla.edu>",
  "MD5sum": "e0330bd0171832de11df84b77922b5ec",
  "_user": "beast-dev",
  "_type": "src",
  "_file": "BeastJar_10.5.1.tar.gz",
  "_fileid": "7256c4bd6f676eb70c45bdc672df16edf77a00ace27618fdf7bdd644c6efbd38",
  "_filesize": 8161016,
  "_sha256": "7256c4bd6f676eb70c45bdc672df16edf77a00ace27618fdf7bdd644c6efbd38",
  "_created": "2026-05-22T08:46:49.000Z",
  "_published": "2026-05-22T08:49:55.204Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 77346786525,
      "time": 124,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7156529687"
    },
    {
      "job": 77346786559,
      "time": 139,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7156533843"
    },
    {
      "job": 77346786599,
      "time": 152,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7156531668"
    },
    {
      "job": 77346786534,
      "time": 146,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7156527267"
    },
    {
      "job": 77346309966,
      "time": 188,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7156490690"
    },
    {
      "job": 77346786558,
      "time": 103,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7156523511"
    },
    {
      "job": 77346786605,
      "time": 87,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7156518585"
    },
    {
      "job": 77346786536,
      "time": 118,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7156527818"
    },
    {
      "job": 77346786592,
      "time": 71,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7156513478"
    }
  ],
  "_buildurl": "https://github.com/r-universe/beast-dev/actions/runs/26277809425",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/beast-dev/beastjar",
  "_commit": {
    "id": "0cbaee7d669ad0fab7b8f36eba5b62772c1cc390",
    "author": "Marc A. Suchard <msuchard@ucla.edu>",
    "committer": "Marc A. Suchard <msuchard@ucla.edu>",
    "message": "update man page for single-core\n",
    "time": 1753027954
  },
  "_maintainer": {
    "name": "Marc A. Suchard",
    "email": "msuchard@ucla.edu",
    "login": "msuchard",
    "description": "",
    "uuid": 149039
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.5.0",
      "role": "Depends"
    },
    {
      "package": "rJava",
      "role": "Imports"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    }
  ],
  "_owner": "beast-dev",
  "_selfowned": true,
  "_usedby": 1,
  "_updates": [
    {
      "week": "2025-29",
      "n": 17
    }
  ],
  "_tags": [],
  "_stars": 1,
  "_contributors": [
    {
      "user": "msuchard",
      "count": 79,
      "uuid": 149039
    }
  ],
  "_userbio": {
    "uuid": 12112426,
    "type": "organization",
    "name": "Bayesian Evolutionary Analysis Sampling Trees"
  },
  "_downloads": {
    "count": 435,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/BeastJar"
  },
  "_devurl": "https://github.com/beast-dev/beastjar",
  "_searchresults": 2,
  "_topics": [
    "openjdk"
  ],
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/BeastJar.html",
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/beast-dev/beastjar",
  "_realowner": "beast-dev",
  "_cranurl": true,
  "_releases": [
    {
      "version": "1.10.5",
      "date": "2020-10-13"
    },
    {
      "version": "1.10.6",
      "date": "2020-10-26"
    },
    {
      "version": "10.5.0",
      "date": "2025-07-20"
    },
    {
      "version": "10.5.1",
      "date": "2025-08-21"
    }
  ],
  "_exports": [
    "supportsJava8"
  ],
  "_help": [
    {
      "page": "BeastJar",
      "title": "BeastJar",
      "topics": [
        "BeastJar"
      ]
    },
    {
      "page": "supportsJava8",
      "title": "Determine if Java virtual machine supports Java",
      "topics": [
        "supportsJava8"
      ]
    }
  ],
  "_readme": "https://github.com/beast-dev/beastjar/raw/HEAD/README.md",
  "_rundeps": [
    "rJava"
  ],
  "_sysdeps": [
    {
      "shlib": "libjvm",
      "package": "openjdk-21-jre-headless",
      "headers": "openjdk-21-jre-headless",
      "source": "openjdk",
      "version": "21.0.10+7-1~24.04",
      "name": "openjdk",
      "homepage": "https://openjdk.java.net/",
      "description": "OpenJDK Java runtime, using Hotspot JIT (headless)"
    }
  ],
  "_score": 3.1760912590556813,
  "_indexed": true,
  "_nocasepkg": "beastjar",
  "_universes": [
    "beast-dev",
    "msuchard"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "10.5.1",
      "date": "2026-05-22T08:48:56.000Z",
      "distro": "noble",
      "commit": "0cbaee7d669ad0fab7b8f36eba5b62772c1cc390",
      "fileid": "847ed05c98d7c0c22c1e795ee09ed249eafffb519e26af16c7d46a45c93680e8",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/beast-dev/actions/runs/26277809425"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "10.5.1",
      "date": "2026-05-22T08:49:09.000Z",
      "distro": "noble",
      "commit": "0cbaee7d669ad0fab7b8f36eba5b62772c1cc390",
      "fileid": "024a1014a1e1fb4f92c19fe96c49d74d7b048322590e498b03b669a5a236ff6c",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/beast-dev/actions/runs/26277809425"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "10.5.1",
      "date": "2026-05-22T08:49:10.000Z",
      "commit": "0cbaee7d669ad0fab7b8f36eba5b62772c1cc390",
      "fileid": "4852ac9233255b40b58c9144cefe89ab975c6e4a47c25331284057c3ca4f21de",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/beast-dev/actions/runs/26277809425"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "10.5.1",
      "date": "2026-05-22T08:48:49.000Z",
      "commit": "0cbaee7d669ad0fab7b8f36eba5b62772c1cc390",
      "fileid": "8e4110e4a18c9138d7c48aafe8dcec09c15396ef528d259c6dee88fe9c7bc097",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/beast-dev/actions/runs/26277809425"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "10.5.1",
      "date": "2026-05-22T08:48:53.000Z",
      "commit": "0cbaee7d669ad0fab7b8f36eba5b62772c1cc390",
      "fileid": "7ad777be7f6b0b5506bda2858993af5f28572dbab5954512f287148030f6573a",
      "status": "success",
      "buildurl": "https://github.com/r-universe/beast-dev/actions/runs/26277809425"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "10.5.1",
      "date": "2026-05-22T08:48:11.000Z",
      "commit": "0cbaee7d669ad0fab7b8f36eba5b62772c1cc390",
      "fileid": "ce13b57d93166bdd6f97482de68695c1a600f70551d7a26025d9a05da1ce06e3",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/beast-dev/actions/runs/26277809425"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "10.5.1",
      "date": "2026-05-22T08:48:36.000Z",
      "commit": "0cbaee7d669ad0fab7b8f36eba5b62772c1cc390",
      "fileid": "25186cd328e52cc25573fd99cdb9cdb3c7466cd032d0f8ac4e572022f5ee2c9f",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/beast-dev/actions/runs/26277809425"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "10.5.1",
      "date": "2026-05-22T08:47:59.000Z",
      "commit": "0cbaee7d669ad0fab7b8f36eba5b62772c1cc390",
      "fileid": "ea6149e17fda9cf8c5888fd46b3ac666486dc9ac670894bbb740988eb26e0bd0",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/beast-dev/actions/runs/26277809425"
    }
  ]
}